HL_8Y0U_065

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_065 not in the Motif Atlas

Homologous match to HL_8C3A_065

Geometric discrepancy: 0.1687

The information below is about HL_8C3A_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8Y0U|1|C1|C|2963
8Y0U|1|C1|G|2964
8Y0U|1|C1|U|2965
8Y0U|1|C1|G|2966
8Y0U|1|C1|A|2967
8Y0U|1|C1|G|2968

Current chains

Chain C1

25S rRNA

Nearby chains

Chain 5

Eukaryotic translation initiation factor 5A-1

Chain LA

Large ribosomal subunit protein uL2A