HL_8Y0U_068

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8Y0U|1|C1|G|3116, 8Y0U|1|C1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.079

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8Y0U|1|C1|C|3110
8Y0U|1|C1|U|3111
8Y0U|1|C1|G|3112
8Y0U|1|C1|A|3113
8Y0U|1|C1|A|3114
8Y0U|1|C1|C|3115
8Y0U|1|C1|G|3116
8Y0U|1|C1|C|3117
8Y0U|1|C1|C|3118
8Y0U|1|C1|U|3119
8Y0U|1|C1|C|3120
8Y0U|1|C1|U|3121
8Y0U|1|C1|A|3122
8Y0U|1|C1|A|3123
8Y0U|1|C1|G|3124

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6A

Chain LO

Large ribosomal subunit protein uL13A

Chain Lm

Ubiquitin-ribosomal protein eL40A fusion protein