HL_8Y0U_086

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_086 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1563

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8Y0U|1|C2|A|520
8Y0U|1|C2|A|521
8Y0U|1|C2|U|522
8Y0U|1|C2|G|523
8Y0U|1|C2|U|524
8Y0U|1|C2|A|525
8Y0U|1|C2|A|526
8Y0U|1|C2|A|527
8Y0U|1|C2|U|528
8Y0U|1|C2|A|529
8Y0U|1|C2|C|530
8Y0U|1|C2|C|531
8Y0U|1|C2|U|532

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SJ

40S ribosomal protein S9-A

Chain SY

40S ribosomal protein S24-A