HL_8Y0U_089

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAAC

Length

22 nucleotides

Bulged bases

8Y0U|1|C2|C|709, 8Y0U|1|C2|G|714, 8Y0U|1|C2|C|726, 8Y0U|1|C2|G|732

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_089 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2502

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

8Y0U|1|C2|G|703
8Y0U|1|C2|C|704
8Y0U|1|C2|U|705
8Y0U|1|C2|A|706
8Y0U|1|C2|A|707
8Y0U|1|C2|C|708
8Y0U|1|C2|C|709
8Y0U|1|C2|U|710
8Y0U|1|C2|U|711
8Y0U|1|C2|G|712
8Y0U|1|C2|A|713
8Y0U|1|C2|G|714
8Y0U|1|C2|C|726
8Y0U|1|C2|U|727
8Y0U|1|C2|U|728
8Y0U|1|C2|G|729
8Y0U|1|C2|G|730
8Y0U|1|C2|C|731
8Y0U|1|C2|G|732
8Y0U|1|C2|A|733
8Y0U|1|C2|A|734
8Y0U|1|C2|C|735

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A