3D structure

PDB id
8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with STM1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.59 Å

Loop

Sequence
GAUCGGGGCAACUCCAU*C
Length
18 nucleotides
Bulged bases
8Y0U|1|C2|G|1696, 8Y0U|1|C2|G|1697, 8Y0U|1|C2|G|1698, 8Y0U|1|C2|G|1699, 8Y0U|1|C2|C|1700, 8Y0U|1|C2|A|1701, 8Y0U|1|C2|A|1702, 8Y0U|1|C2|C|1703, 8Y0U|1|C2|U|1704, 8Y0U|1|C2|C|1705, 8Y0U|1|C2|C|1706, 8Y0U|1|C2|A|1707
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8Y0U_108 not in the Motif Atlas
Geometric match to HL_2ZZM_002
Geometric discrepancy: 0.2805
The information below is about HL_2ZZM_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_13963.3
Basepair signature
cWW-F-F
Number of instances in this motif group
4

Unit IDs

8Y0U|1|C2|G|1692
8Y0U|1|C2|A|1693
8Y0U|1|C2|U|1708
8Y0U|1|C2|C|1709
8Y0U|1|C2|G|1696
8Y0U|1|C2|G|1697
8Y0U|1|C2|G|1698
8Y0U|1|C2|G|1699
8Y0U|1|C2|C|1700
8Y0U|1|C2|A|1701
8Y0U|1|C2|A|1702
8Y0U|1|C2|C|1703
8Y0U|1|C2|U|1704
8Y0U|1|C2|C|1705
8Y0U|1|C2|C|1706
8Y0U|1|C2|A|1707
8Y0U|1|C2|U|1708
*
8Y0U|1|C2|C|1709

Current chains

Chain C2
18S rRNA

Nearby chains

Chain LW
Large ribosomal subunit protein eL24A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.3642 s
Application loaded.