HL_8Y0U_108
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- GAUCGGGGCAACUCCAU*C
- Length
- 18 nucleotides
- Bulged bases
- 8Y0U|1|C2|G|1696, 8Y0U|1|C2|G|1697, 8Y0U|1|C2|G|1698, 8Y0U|1|C2|G|1699, 8Y0U|1|C2|C|1700, 8Y0U|1|C2|A|1701, 8Y0U|1|C2|A|1702, 8Y0U|1|C2|C|1703, 8Y0U|1|C2|U|1704, 8Y0U|1|C2|C|1705, 8Y0U|1|C2|C|1706, 8Y0U|1|C2|A|1707
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y0U_108 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.2805
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8Y0U|1|C2|G|1692
8Y0U|1|C2|A|1693
8Y0U|1|C2|U|1708
8Y0U|1|C2|C|1709
8Y0U|1|C2|G|1696
8Y0U|1|C2|G|1697
8Y0U|1|C2|G|1698
8Y0U|1|C2|G|1699
8Y0U|1|C2|C|1700
8Y0U|1|C2|A|1701
8Y0U|1|C2|A|1702
8Y0U|1|C2|C|1703
8Y0U|1|C2|U|1704
8Y0U|1|C2|C|1705
8Y0U|1|C2|C|1706
8Y0U|1|C2|A|1707
8Y0U|1|C2|U|1708
*
8Y0U|1|C2|C|1709
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain LW
- Large ribosomal subunit protein eL24A
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