HL_8Y0U_114
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- GGUGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y0U_114 not in the Motif Atlas
- Homologous match to HL_8C3A_074
- Geometric discrepancy: 0.1166
- The information below is about HL_8C3A_074
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 302
Unit IDs
8Y0U|1|C4|G|88
8Y0U|1|C4|G|89
8Y0U|1|C4|U|90
8Y0U|1|C4|G|91
8Y0U|1|C4|A|92
8Y0U|1|C4|C|93
Current chains
- Chain C4
- 5S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large ribosomal subunit protein uL30A
- Chain LI
- Large ribosomal subunit protein uL16
- Chain LS
- Large ribosomal subunit protein eL20A
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