HL_8Y0W_013

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0W_013 not in the Motif Atlas

Geometric match to HL_2Y8Y_001

Geometric discrepancy: 0.3778

The information below is about HL_2Y8Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8Y0W|1|L5|G|994
8Y0W|1|L5|C|995
8Y0W|1|L5|G|996
8Y0W|1|L5|C|1047
8Y0W|1|L5|G|1048
8Y0W|1|L5|C|1049
8Y0W|1|L5|C|1050

Current chains

Chain L5

28S rRNA

Nearby chains