HL_8Y0W_057

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGCCCCGAGGGGCU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0W_057 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2246

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8Y0W|1|L5|A|4098
8Y0W|1|L5|G|4099
8Y0W|1|L5|C|4100
8Y0W|1|L5|C|4101
8Y0W|1|L5|C|4102
8Y0W|1|L5|C|4103
8Y0W|1|L5|G|4104
8Y0W|1|L5|A|4105
8Y0W|1|L5|G|4106
8Y0W|1|L5|G|4107
8Y0W|1|L5|G|4108
8Y0W|1|L5|G|4109
8Y0W|1|L5|C|4110
8Y0W|1|L5|U|4111

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain Lg

60S ribosomal protein L34

Chain SB

40S ribosomal protein S3a