HL_8Y0W_070

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0W_070 not in the Motif Atlas

Geometric match to HL_4V9F_066

Geometric discrepancy: 0.0604

The information below is about HL_4V9F_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8Y0W|1|L5|C|4603
8Y0W|1|L5|G|4604
8Y0W|1|L5|A|4605
8Y0W|1|L5|G|4606
8Y0W|1|L5|A|4607
8Y0W|1|L5|G|4608

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain LH

60S ribosomal protein L9

Chain Lm

Ubiquitin-60S ribosomal protein L40