HL_8Y0W_086

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0W_086 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.3789

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8Y0W|1|S2|C|195
8Y0W|1|S2|C|196
8Y0W|1|S2|U|197
8Y0W|1|S2|U|198
8Y0W|1|S2|C|199
8Y0W|1|S2|G|200
8Y0W|1|S2|C|201
8Y0W|1|S2|G|202
8Y0W|1|S2|G|203
8Y0W|1|S2|G|204

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8