HL_8Y0W_097

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCGGCGGGGCCCGA

Length

14 nucleotides

Bulged bases

8Y0W|1|S2|G|786, 8Y0W|1|S2|G|787

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0W_097 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3581

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8Y0W|1|S2|U|749
8Y0W|1|S2|C|750
8Y0W|1|S2|G|751
8Y0W|1|S2|G|752
8Y0W|1|S2|C|753
8Y0W|1|S2|G|786
8Y0W|1|S2|G|787
8Y0W|1|S2|G|788
8Y0W|1|S2|G|789
8Y0W|1|S2|C|790
8Y0W|1|S2|C|791
8Y0W|1|S2|C|792
8Y0W|1|S2|G|793
8Y0W|1|S2|A|794

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6

Chain SH

40S ribosomal protein S7