HL_8Y0W_100

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

8Y0W|1|S2|G|891, 8Y0W|1|S2|U|892, 8Y0W|1|S2|U|899

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0W_100 not in the Motif Atlas

Geometric match to HL_7EQJ_004

Geometric discrepancy: 0.3541

The information below is about HL_7EQJ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

8Y0W|1|S2|U|885
8Y0W|1|S2|A|886
8Y0W|1|S2|U|887
8Y0W|1|S2|U|888
8Y0W|1|S2|U|889
8Y0W|1|S2|U|890
8Y0W|1|S2|G|891
8Y0W|1|S2|U|892
8Y0W|1|S2|U|893
8Y0W|1|S2|G|894
8Y0W|1|S2|G|895
8Y0W|1|S2|U|896
8Y0W|1|S2|U|897
8Y0W|1|S2|U|898
8Y0W|1|S2|U|899
8Y0W|1|S2|C|900
8Y0W|1|S2|G|901

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6