HL_8Y0X_002

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAAUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0X_002 not in the Motif Atlas

Homologous match to HL_6PMO_004

Geometric discrepancy: 0.3502

The information below is about HL_6PMO_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y0X|1|E|G|30
8Y0X|1|E|A|36
8Y0X|1|E|A|37
8Y0X|1|E|A|38
8Y0X|1|E|U|39
8Y0X|1|E|C|40

Current chains

Chain E

EtRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SO

40S ribosomal protein S14

Chain SQ

40S ribosomal protein S16