HL_8Y0X_023

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCGCUCG

Length

8 nucleotides

Bulged bases

8Y0X|1|L5|G|1408

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0X_023 not in the Motif Atlas

Geometric match to HL_4V9F_004

Geometric discrepancy: 0.3833

The information below is about HL_4V9F_004

Detailed Annotation

Mini UNCG related

Broad Annotation

Mini UNCG related

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

8Y0X|1|L5|C|1405
8Y0X|1|L5|G|1406
8Y0X|1|L5|C|1407
8Y0X|1|L5|G|1408
8Y0X|1|L5|C|1409
8Y0X|1|L5|U|1410
8Y0X|1|L5|C|1411
8Y0X|1|L5|G|1412

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lb

60S ribosomal protein L29