HL_8Y0X_041

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCUCC

Length

6 nucleotides

Bulged bases

8Y0X|1|L5|C|2488, 8Y0X|1|L5|U|2490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0X_041 not in the Motif Atlas

Geometric match to HL_2Y8Y_001

Geometric discrepancy: 0.3918

The information below is about HL_2Y8Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8Y0X|1|L5|G|2487
8Y0X|1|L5|C|2488
8Y0X|1|L5|C|2489
8Y0X|1|L5|U|2490
8Y0X|1|L5|C|2491
8Y0X|1|L5|C|2492

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA