HL_8Y0X_077

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8Y0X|1|L5|G|4694, 8Y0X|1|L5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0X_077 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0606

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8Y0X|1|L5|C|4688
8Y0X|1|L5|U|4689
8Y0X|1|L5|G|4690
8Y0X|1|L5|A|4691
8Y0X|1|L5|A|4692
8Y0X|1|L5|C|4693
8Y0X|1|L5|G|4694
8Y0X|1|L5|C|4695
8Y0X|1|L5|C|4696
8Y0X|1|L5|U|4697
8Y0X|1|L5|C|4698
8Y0X|1|L5|U|4699
8Y0X|1|L5|A|4700
8Y0X|1|L5|A|4701
8Y0X|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40