HL_8Y0X_079

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

8Y0X|1|L5|G|4910, 8Y0X|1|L5|A|4911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0X_079 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1166

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8Y0X|1|L5|G|4907
8Y0X|1|L5|G|4908
8Y0X|1|L5|A|4909
8Y0X|1|L5|G|4910
8Y0X|1|L5|A|4911
8Y0X|1|L5|G|4912
8Y0X|1|L5|G|4913
8Y0X|1|L5|C|4914

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a