HL_8Y0X_091

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0X_091 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2716

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8Y0X|1|S2|C|195
8Y0X|1|S2|C|196
8Y0X|1|S2|U|197
8Y0X|1|S2|U|198
8Y0X|1|S2|C|199
8Y0X|1|S2|G|200
8Y0X|1|S2|C|201
8Y0X|1|S2|G|202
8Y0X|1|S2|G|203
8Y0X|1|S2|G|204

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8