HL_8Y0X_123

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGCGGACUGUCCCCAGUGCGCC

Length

22 nucleotides

Bulged bases

8Y0X|1|L5|C|1172, 8Y0X|1|L5|G|1178, 8Y0X|1|L5|U|1179, 8Y0X|1|L5|C|1181, 8Y0X|1|L5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y0X|1|L5|G|1170
8Y0X|1|L5|G|1171
8Y0X|1|L5|C|1172
8Y0X|1|L5|G|1173
8Y0X|1|L5|G|1174
8Y0X|1|L5|A|1175
8Y0X|1|L5|C|1176
8Y0X|1|L5|U|1177
8Y0X|1|L5|G|1178
8Y0X|1|L5|U|1179
8Y0X|1|L5|C|1180
8Y0X|1|L5|C|1181
8Y0X|1|L5|C|1182
8Y0X|1|L5|C|1183
8Y0X|1|L5|A|1184
8Y0X|1|L5|G|1185
8Y0X|1|L5|U|1186
8Y0X|1|L5|G|1187
8Y0X|1|L5|C|1188
8Y0X|1|L5|G|1189
8Y0X|1|L5|C|1190
8Y0X|1|L5|C|1191

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like