HL_8Y36_028

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y36_028 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.0896

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8Y36|1|A|G|1022
8Y36|1|A|A|1023
8Y36|1|A|A|1024
8Y36|1|A|A|1025
8Y36|1|A|C|1026
8Y36|1|A|A|1027
8Y36|1|A|G|1028
8Y36|1|A|C|1029

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein bL20

Chain P

Large ribosomal subunit protein bL21

Chain X

Large ribosomal subunit protein uL30