HL_8Y36_035

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

8Y36|1|A|U|1433, 8Y36|1|A|U|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y36_035 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.0915

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8Y36|1|A|G|1426
8Y36|1|A|U|1427
8Y36|1|A|U|1428
8Y36|1|A|G|1429
8Y36|1|A|A|1430
8Y36|1|A|U|1431
8Y36|1|A|A|1432
8Y36|1|A|U|1433
8Y36|1|A|U|1434
8Y36|1|A|C|1435

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein uL23