HL_8Y36_038

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

8Y36|1|A|A|1658, 8Y36|1|A|A|1660, 8Y36|1|A|A|1662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y36_038 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0682

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8Y36|1|A|C|1656
8Y36|1|A|G|1657
8Y36|1|A|A|1658
8Y36|1|A|C|1659
8Y36|1|A|A|1660
8Y36|1|A|C|1661
8Y36|1|A|A|1662
8Y36|1|A|G|1663

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain Q

Large ribosomal subunit protein uL22