HL_8Y36_065

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

ACUUCGGU

Length

8 nucleotides

Bulged bases

8Y36|1|A|G|2824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y36_065 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.5247

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8Y36|1|A|A|2818
8Y36|1|A|C|2819
8Y36|1|A|U|2820
8Y36|1|A|U|2821
8Y36|1|A|C|2822
8Y36|1|A|G|2823
8Y36|1|A|G|2824
8Y36|1|A|U|2825

Current chains

Chain A

23S ribosomal RNA

Nearby chains