HL_8Y36_072
3D structure
- PDB id
- 8Y36 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- UUCCCAUGCCGAACA
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y36_072 not in the Motif Atlas
- Homologous match to HL_8P9A_183
- Geometric discrepancy: 0.3351
- The information below is about HL_8P9A_183
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01182.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8Y36|1|B|U|32
8Y36|1|B|U|33
8Y36|1|B|C|34
8Y36|1|B|C|35
8Y36|1|B|C|36
8Y36|1|B|A|37
8Y36|1|B|U|38
8Y36|1|B|G|39
8Y36|1|B|C|40
8Y36|1|B|C|41
8Y36|1|B|G|42
8Y36|1|B|A|43
8Y36|1|B|A|44
8Y36|1|B|C|45
8Y36|1|B|A|46
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- Large ribosomal subunit protein uL5
- Chain M
- Large ribosomal subunit protein uL18
- Chain Y
- Large ribosomal subunit protein bL31B
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