HL_8Y38_029

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GUUGGCUUAGAAGCAGCCAUC

Length

21 nucleotides

Bulged bases

8Y38|1|A|A|1114, 8Y38|1|A|G|1115, 8Y38|1|A|C|1116, 8Y38|1|A|U|1122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y38|1|A|G|1103
8Y38|1|A|U|1104
8Y38|1|A|U|1105
8Y38|1|A|G|1106
8Y38|1|A|G|1107
8Y38|1|A|C|1108
8Y38|1|A|U|1109
8Y38|1|A|U|1110
8Y38|1|A|A|1111
8Y38|1|A|G|1112
8Y38|1|A|A|1113
8Y38|1|A|A|1114
8Y38|1|A|G|1115
8Y38|1|A|C|1116
8Y38|1|A|A|1117
8Y38|1|A|G|1118
8Y38|1|A|C|1119
8Y38|1|A|C|1120
8Y38|1|A|A|1121
8Y38|1|A|U|1122
8Y38|1|A|C|1123

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36