HL_8Y38_040

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

8Y38|1|A|A|1658, 8Y38|1|A|A|1660, 8Y38|1|A|A|1662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y38_040 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.068

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

8Y38|1|A|C|1656
8Y38|1|A|G|1657
8Y38|1|A|A|1658
8Y38|1|A|C|1659
8Y38|1|A|A|1660
8Y38|1|A|C|1661
8Y38|1|A|A|1662
8Y38|1|A|G|1663

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain Q

Large ribosomal subunit protein uL22