HL_8Y38_066
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 8Y38|1|A|G|2778
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y38_066 not in the Motif Atlas
- Homologous match to HL_4WF9_062
- Geometric discrepancy: 0.1406
- The information below is about HL_4WF9_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 10
Unit IDs
8Y38|1|A|C|2772
8Y38|1|A|U|2773
8Y38|1|A|G|2774
8Y38|1|A|A|2775
8Y38|1|A|A|2776
8Y38|1|A|A|2777
8Y38|1|A|G|2778
8Y38|1|A|C|2779
8Y38|1|A|A|2780
8Y38|1|A|U|2781
8Y38|1|A|C|2782
8Y38|1|A|U|2783
8Y38|1|A|A|2784
8Y38|1|A|A|2785
8Y38|1|A|G|2786
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL36
- Chain G
- Large ribosomal subunit protein uL6
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