HL_8Y38_067

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

ACUUCGGU

Length

8 nucleotides

Bulged bases

8Y38|1|A|G|2824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y38_067 not in the Motif Atlas

Homologous match to HL_7A0S_066

Geometric discrepancy: 0.5627

The information below is about HL_7A0S_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y38|1|A|A|2818
8Y38|1|A|C|2819
8Y38|1|A|U|2820
8Y38|1|A|U|2821
8Y38|1|A|C|2822
8Y38|1|A|G|2823
8Y38|1|A|G|2824
8Y38|1|A|U|2825

Current chains

Chain A

23S ribosomal RNA

Nearby chains