HL_8Y38_068
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- AAAGAUGAU
- Length
- 9 nucleotides
- Bulged bases
- 8Y38|1|A|A|2840
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y38_068 not in the Motif Atlas
- Homologous match to HL_4WF9_064
- Geometric discrepancy: 0.1082
- The information below is about HL_4WF9_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37889.1
- Basepair signature
- cWW-cSW-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8Y38|1|A|A|2839
8Y38|1|A|A|2840
8Y38|1|A|A|2841
8Y38|1|A|G|2842
8Y38|1|A|A|2843
8Y38|1|A|U|2844
8Y38|1|A|G|2845
8Y38|1|A|A|2846
8Y38|1|A|U|2847
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL3
- Chain L
- Large ribosomal subunit protein bL17
Coloring options: