HL_8Y38_085

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y38_085 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.0998

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_92337.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

8Y38|1|a|G|625
8Y38|1|a|C|626
8Y38|1|a|U|627
8Y38|1|a|C|628
8Y38|1|a|A|629
8Y38|1|a|A|630
8Y38|1|a|C|631

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4

Chain p

Small ribosomal subunit protein bS16