HL_8Y38_093

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UAGAGAUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y38_093 not in the Motif Atlas

Homologous match to HL_6CZR_093

Geometric discrepancy: 0.4959

The information below is about HL_6CZR_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y38|1|a|U|1020
8Y38|1|a|A|1021
8Y38|1|a|G|1022
8Y38|1|a|A|1023
8Y38|1|a|G|1024
8Y38|1|a|A|1025
8Y38|1|a|U|1026
8Y38|1|a|A|1027

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

Small ribosomal subunit protein uS14B

Chain s

Small ribosomal subunit protein uS19