HL_8Y38_106

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GCUGAAAGCAUCUAAGC

Length

17 nucleotides

Bulged bases

8Y38|1|A|G|2778, 8Y38|1|A|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y38_106 not in the Motif Atlas

Homologous match to HL_7A0S_074

Geometric discrepancy: 0.2747

The information below is about HL_7A0S_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28904.1

Basepair signature

cWW-F-F-tWH-cWH-tSH-tHW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8Y38|1|A|G|2771
8Y38|1|A|C|2772
8Y38|1|A|U|2773
8Y38|1|A|G|2774
8Y38|1|A|A|2775
8Y38|1|A|A|2776
8Y38|1|A|A|2777
8Y38|1|A|G|2778
8Y38|1|A|C|2779
8Y38|1|A|A|2780
8Y38|1|A|U|2781
8Y38|1|A|C|2782
8Y38|1|A|U|2783
8Y38|1|A|A|2784
8Y38|1|A|A|2785
8Y38|1|A|G|2786
8Y38|1|A|C|2787

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36

Chain G

Large ribosomal subunit protein uL6