HL_8Y39_006

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8Y39|1|A|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y39_006 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.0822

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8Y39|1|A|G|197
8Y39|1|A|A|198
8Y39|1|A|A|199
8Y39|1|A|A|200
8Y39|1|A|C|201
8Y39|1|A|A|202
8Y39|1|A|U|203
8Y39|1|A|C|204

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

Large ribosomal subunit protein uL15

Chain V

Large ribosomal subunit protein bL28