HL_8Y39_029

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUGGCUUAGAAGCAGCCAUC

Length

21 nucleotides

Bulged bases

8Y39|1|A|A|1114, 8Y39|1|A|G|1115, 8Y39|1|A|C|1116, 8Y39|1|A|U|1122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y39|1|A|G|1103
8Y39|1|A|U|1104
8Y39|1|A|U|1105
8Y39|1|A|G|1106
8Y39|1|A|G|1107
8Y39|1|A|C|1108
8Y39|1|A|U|1109
8Y39|1|A|U|1110
8Y39|1|A|A|1111
8Y39|1|A|G|1112
8Y39|1|A|A|1113
8Y39|1|A|A|1114
8Y39|1|A|G|1115
8Y39|1|A|C|1116
8Y39|1|A|A|1117
8Y39|1|A|G|1118
8Y39|1|A|C|1119
8Y39|1|A|C|1120
8Y39|1|A|A|1121
8Y39|1|A|U|1122
8Y39|1|A|C|1123

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36