HL_8Y39_033

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

8Y39|1|A|C|1362, 8Y39|1|A|U|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y39_033 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.0908

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

8Y39|1|A|G|1361
8Y39|1|A|C|1362
8Y39|1|A|U|1363
8Y39|1|A|C|1364
8Y39|1|A|G|1365
8Y39|1|A|U|1366
8Y39|1|A|C|1367

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein bL17

Chain Q

Large ribosomal subunit protein uL22