HL_8Y39_036

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUUGGAUUG

Length

11 nucleotides

Bulged bases

8Y39|1|A|U|1498, 8Y39|1|A|U|1504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y39|1|A|C|1495
8Y39|1|A|G|1496
8Y39|1|A|A|1497
8Y39|1|A|U|1498
8Y39|1|A|U|1499
8Y39|1|A|G|1500
8Y39|1|A|G|1501
8Y39|1|A|A|1502
8Y39|1|A|U|1503
8Y39|1|A|U|1504
8Y39|1|A|G|1505

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein bL17