HL_8Y39_041

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

8Y39|1|A|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y39_041 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.1149

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8Y39|1|A|A|1673
8Y39|1|A|U|1674
8Y39|1|A|G|1675
8Y39|1|A|A|1676
8Y39|1|A|G|1677
8Y39|1|A|A|1678
8Y39|1|A|A|1679
8Y39|1|A|U|1680
8Y39|1|A|U|1681

Current chains

Chain A

23S ribosomal RNA

Nearby chains