HL_8Y39_050

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8Y39|1|A|A|2057, 8Y39|1|A|A|2058, 8Y39|1|A|G|2059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y39_050 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1457

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

8Y39|1|A|G|2054
8Y39|1|A|U|2055
8Y39|1|A|G|2056
8Y39|1|A|A|2057
8Y39|1|A|A|2058
8Y39|1|A|G|2059
8Y39|1|A|A|2060
8Y39|1|A|U|2061
8Y39|1|A|G|2062
8Y39|1|A|C|2063

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain P

Large ribosomal subunit protein bL21

Chain Z

Large ribosomal subunit protein bL32