HL_8Y39_055

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUUGAAAUC*C

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y39_055 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3105

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8Y39|1|A|G|2330
8Y39|1|A|G|2331
8Y39|1|A|U|2332
8Y39|1|A|U|2333
8Y39|1|A|G|2334
8Y39|1|A|A|2336
8Y39|1|A|A|2337
8Y39|1|A|A|2338
8Y39|1|A|U|2339
8Y39|1|A|C|2340
*
8Y39|1|A|C|2340

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

Large ribosomal subunit protein uL5