HL_8Y39_066

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8Y39|1|A|G|2778

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y39_066 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1406

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

8Y39|1|A|C|2772
8Y39|1|A|U|2773
8Y39|1|A|G|2774
8Y39|1|A|A|2775
8Y39|1|A|A|2776
8Y39|1|A|A|2777
8Y39|1|A|G|2778
8Y39|1|A|C|2779
8Y39|1|A|A|2780
8Y39|1|A|U|2781
8Y39|1|A|C|2782
8Y39|1|A|U|2783
8Y39|1|A|A|2784
8Y39|1|A|A|2785
8Y39|1|A|G|2786

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36

Chain G

Large ribosomal subunit protein uL6