HL_8Y39_070
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAUGCCG
- Length
- 7 nucleotides
- Bulged bases
- 8Y39|1|B|C|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y39_070 not in the Motif Atlas
- Geometric match to HL_2Y9H_003
- Geometric discrepancy: 0.1888
- The information below is about HL_2Y9H_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.8
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 23
Unit IDs
8Y39|1|B|C|36
8Y39|1|B|A|37
8Y39|1|B|U|38
8Y39|1|B|G|39
8Y39|1|B|C|40
8Y39|1|B|C|41
8Y39|1|B|G|42
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- Large ribosomal subunit protein uL5
- Chain M
- Large ribosomal subunit protein uL18
- Chain Y
- Large ribosomal subunit protein bL31B
Coloring options: