HL_8Y39_100
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAUCAGCAUGC
- Length
- 11 nucleotides
- Bulged bases
- 8Y39|1|a|U|1374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y39_100 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.1108
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8Y39|1|a|G|1366
8Y39|1|a|A|1367
8Y39|1|a|U|1368
8Y39|1|a|C|1369
8Y39|1|a|A|1370
8Y39|1|a|G|1371
8Y39|1|a|C|1372
8Y39|1|a|A|1373
8Y39|1|a|U|1374
8Y39|1|a|G|1375
8Y39|1|a|C|1376
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain i
- Small ribosomal subunit protein uS9
- Chain j
- Small ribosomal subunit protein uS10
- Chain n
- Small ribosomal subunit protein uS14B
Coloring options: