HL_8Y39_102
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGUAAGUAA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y39_102 not in the Motif Atlas
- Homologous match to HL_4WF9_002
- Geometric discrepancy: 0.3475
- The information below is about HL_4WF9_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_00911.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8Y39|1|A|U|87
8Y39|1|A|G|88
8Y39|1|A|U|89
8Y39|1|A|A|90
8Y39|1|A|A|91
8Y39|1|A|G|92
8Y39|1|A|U|93
8Y39|1|A|A|94
8Y39|1|A|A|95
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain R
- Large ribosomal subunit protein uL23
- Chain S
- Large ribosomal subunit protein uL24
- Chain W
- Large ribosomal subunit protein uL29
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