HL_8Y5M_019

3D structure

PDB id

8Y5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5M_019 not in the Motif Atlas

Geometric match to HL_5J7L_153

Geometric discrepancy: 0.1825

The information below is about HL_5J7L_153

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13529.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8Y5M|1|1|U|641
8Y5M|1|1|U|642
8Y5M|1|1|A|643
8Y5M|1|1|A|644
8Y5M|1|1|C|645
8Y5M|1|1|U|646
8Y5M|1|1|G|647

Current chains

Chain 1

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L33

Chain E

50S ribosomal protein L35