HL_8Y5M_028

3D structure

PDB id

8Y5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GACGCUUAUGCGUU

Length

14 nucleotides

Bulged bases

8Y5M|1|1|A|1175

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y5M|1|1|G|1168
8Y5M|1|1|A|1169
8Y5M|1|1|C|1170
8Y5M|1|1|G|1171
8Y5M|1|1|C|1172
8Y5M|1|1|U|1173
8Y5M|1|1|U|1174
8Y5M|1|1|A|1175
8Y5M|1|1|U|1176
8Y5M|1|1|G|1177
8Y5M|1|1|C|1178
8Y5M|1|1|G|1179
8Y5M|1|1|U|1180
8Y5M|1|1|U|1181

Current chains

Chain 1

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L15

Chain r

50S ribosomal protein L21