HL_8YDE_027

3D structure

PDB id

8YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8YDE|1|1|U|1066, 8YDE|1|1|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDE|1|1|C|1064
8YDE|1|1|U|1065
8YDE|1|1|U|1066
8YDE|1|1|A|1067
8YDE|1|1|G|1068
8YDE|1|1|A|1069
8YDE|1|1|A|1070
8YDE|1|1|G|1071
8YDE|1|1|C|1072
8YDE|1|1|A|1073
8YDE|1|1|G|1074

Current chains

Chain 1

23S rRNA

Nearby chains

Chain i

50S ribosomal protein L11