HL_8YDE_042

3D structure

PDB id

8YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

8YDE|1|1|U|1729, 8YDE|1|1|C|1732

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDE_042 not in the Motif Atlas

Geometric match to HL_8OI5_017

Geometric discrepancy: 0.2808

The information below is about HL_8OI5_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8YDE|1|1|C|1727
8YDE|1|1|C|1728
8YDE|1|1|U|1729
8YDE|1|1|C|1730
8YDE|1|1|G|1731
8YDE|1|1|C|1732
8YDE|1|1|G|1733

Current chains

Chain 1

23S rRNA

Nearby chains