HL_8YDE_078

3D structure

PDB id

8YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDE_078 not in the Motif Atlas

Geometric match to HL_8B0X_006

Geometric discrepancy: 0.0619

The information below is about HL_8B0X_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8YDE|1|3|U|296
8YDE|1|3|G|297
8YDE|1|3|A|298
8YDE|1|3|G|299
8YDE|1|3|A|300
8YDE|1|3|G|301

Current chains

Chain 3

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S4

Chain J

30S ribosomal protein S5

Chain V

30S ribosomal protein S17