HL_8YDE_079
3D structure
- PDB id
- 8YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- AACUGAGACACGGU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDE_079 not in the Motif Atlas
- Geometric match to HL_8B0X_007
- Geometric discrepancy: 0.0824
- The information below is about HL_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39665.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8YDE|1|3|A|320
8YDE|1|3|A|321
8YDE|1|3|C|322
8YDE|1|3|U|323
8YDE|1|3|G|324
8YDE|1|3|A|325
8YDE|1|3|G|326
8YDE|1|3|A|327
8YDE|1|3|C|328
8YDE|1|3|A|329
8YDE|1|3|C|330
8YDE|1|3|G|331
8YDE|1|3|G|332
8YDE|1|3|U|333
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain U
- 30S ribosomal protein S16
- Chain Y
- 30S ribosomal protein S20
Coloring options: