HL_8YDF_006
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GGAACUGAAACAUCUAAGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8YDF|1|1|A|196, 8YDF|1|1|A|199
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDF|1|1|G|188
8YDF|1|1|G|189
8YDF|1|1|A|190
8YDF|1|1|A|191
8YDF|1|1|C|192
8YDF|1|1|U|193
8YDF|1|1|G|194
8YDF|1|1|A|195
8YDF|1|1|A|196
8YDF|1|1|A|197
8YDF|1|1|C|198
8YDF|1|1|A|199
8YDF|1|1|U|200
8YDF|1|1|C|201
8YDF|1|1|U|202
8YDF|1|1|A|203
8YDF|1|1|A|204
8YDF|1|1|G|205
8YDF|1|1|U|206
8YDF|1|1|A|207
8YDF|1|1|C|208
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain D
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L35
- Chain l
- 50S ribosomal protein L15
- Chain x
- 50S ribosomal protein L28
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